Mass spectrometry is an analytical technique that is used to measure the mass-to-charge ratio of ions, including peptides, proteins, small molecules, and nucleic acids. It can be used for a multitude of purposes, including the discovery of system-wide perturbations, the study of protein dynamics, and the chemical labeling of proteins with either endogenous or exogenous molecules.

Researchers

Vera Moiseenkova-Bell, Ph.D

Vera Moiseenkova-Bell, Ph.D

The Moiseenkova-Bell laboratory research is focused on structure-function analysis of Transient Receptor Potential (TRP) channels and their interaction with agonists/antagonists to enhance our understanding of their function at the molecular level. In addition, her laboratory research program seeks to understand how TRP channels regulate cellular functions and the role of their dysregulation in human disease.
CryoEM and CryoET cryoET cryoEM Mass Spectrometry
Yi-Wei Chang, Ph.D

Yi-Wei Chang, Ph.D

The Chang laboratory specializes in the utilization and advancement of cryo-electron tomography (cryo-ET) methods and related technologies for investigating molecular structures inside cellular context. His research group employs cryo-ET to investigate a wide spectrum of host-pathogen interactions, unraveling the structural mechanisms behind various diseases that can only be elucidated through such in situ structural biology methods.
CryoEM and CryoET cryoET cryoEM Mass Spectrometry
Kenji Murakami, Ph.D

Kenji Murakami, Ph.D

Eukaryotic gene expression by RNA polymerase II (pol II) requires the orchestration of a large number of factors during each stage of transcription. Proper gene regulation underlies organismal development, environmental responses and can be disrupted in disease. The goal of our lab is to determine the mechanisms of pol II transitions between initiation, elongation, and re-initiation, and its regulations in the context of chromatin, which we will accomplish through structural (cryo-EM and cross-linking mass spectrometry) and biochemical dissection of these macromolecular complexes. The lab also aims to understand the mechanism of nucleotide excision repair (NER). The eukaryote genome is actively scanned for DNA damage through at least two independent mechanisms known as transcription-coupled nucleotide excision repair (TC-NER) and global genomic nucleotide excision repair (GG-NER). In particular, we focus on the mechanism of how a set of factors serve dual functions in NER and transcription and how they are regulated.
cryoET cryoEM Mass Spectrometry
Ben E. Black, Ph.D

Ben E. Black, Ph.D

The Black Lab is answering the most pressing questions in chromosome biology, such as:
  • How does genetic inheritance actually work?
  • How was epigenetic information transmitted to us from our parents?
  • Can building new artificial chromosomes help us understand how natural chromosomes work?
  • How are the key enzymes protecting the integrity of our genome specifically and potently activated by potential catastrophes like DNA breaks or chromosome misattachment to the mitotic spindle?
cryoET cryoEM Mass Spectrometry
Akhilesh Basi Reddy, Ph.D

Akhilesh Basi Reddy, Ph.D

Circadian Clocks Our laboratory is interested in circadian rhythms, which are daily cycles of physiology and behaviour that persist when organisms are isolated from the outside world. They represent a fundamental biological mechanism, and are present at all levels of life, from bacteria through to humans. We need them in order to anticipate and thus adapt to the solar cycle of night and day. Although we now understand a great deal about some components of the clockwork, our recent work has implicated a significant contribution of non-transcriptional and post-translational processes to the time-keeping mechanism. In particular, we are interested in redox and metabolic oscillations that power the clockwork within single cells and tissues, such as those shown by peroxiredoxin proteins. In humans, the sleep-wake cycle is the most obvious circadian rhythm but other, more subtle, endocrine rhythms coordinate our body's physiology. Disruption of our circadian programming through old age, neurological disease, and even shift-work, is a growing cause of significant ill health. Of note, disorders of metabolism, as well as cancer, have now been closely linked to circadian dysfunction. We thus use a wide range of multi-disciplinary approaches, encompassing synthetic and systems biology, to deconstruct how clocks in the brain and in visceral tissues are able to control this vast array of physiological processes.
cryoEM Mass Spectrometry
George Burslem, Ph.D

George Burslem, Ph.D

The Burslem lab is interested in developing chemical tools to understand and modulate lysine post-translational modifications, specifically acetylation and ubiquitination. The laboratory is particularly interested in novel pharmacological approaches to modulate post-translational modifications which regulate gene expression and protein stability.
Chemical Biology Mass Spectrometry
Kathy Fange Liu, Ph.D

Kathy Fange Liu, Ph.D

The Liu Lab is affiliated with the Department of Biochemistry and Biophysics at the University of Pennsylvania Perelman School of Medicine. We utilized a battery of biochemical, cellular, and high-throughput sequencing approaches to study the function of RNA modifying enzymes and sex chromosome-encoded protein homologs in human physiology and disease.
X-ray Crystallography Mass Spectrometry